PUBLICATIONS

2024

Smoking induced salivary microbiome dysbiosis and is correlated with lipid biomarkers.
Layla I Mohammed, Rozaimi Razali, Zain Zaki Zakaria, Fatiha M Benslimane, Farhan Cyprian, Maha Al-Asmakh.
BMC Oral Health 24 (1), 608

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Vitamin D status affects proteomic profile of HDL-associated proteins and inflammatory mediators in dyslipidemia.
H Mousa, RM Razali, SM Zughaier.
The Journal of Nutritional Biochemistry 123, 109472Download

2023

Genomic Alterations, Gene Expression Profiles and Functional Enrichment of Normal-Karyotype Acute Myeloid Leukaemia Based on Targeted Next-Generation Sequencing.
A Ambayya, R Razali, S Sulong, ES Zulkefli, YY Yap, J Sathar, R Hassan.
Cancers 15 (5), 1386.Download
Comparing the Biology of Young versus Old Age Estrogen-Receptor-Positive Breast Cancer through Gene and Protein Expression Analyses.
Alaa Siddig, Wan Faiziah Wan Abdul Rahman, Siti Norasikin Mohd Nafi, Sarina Sulong, Maya Mazuwin Yahya, Tengku Ahmad Damitri Al-Astani Tengku Din, Rozaimi Razali, Kamarul Imran Musa.
Biomedicines 11 (1), 200Download

2022

DES-Amyloidoses “Amyloidoses through the looking-glass”: A knowledgebase developed for exploring and linking information related to human amyloid-related diseases.
Vladan P Bajic, Adil Salhi, Katja Lakota, Aleksandar Radovanovic, Rozaimi Razali, Lada Zivkovic, Biljana Spremo-Potparevic, Mahmut Uludag, Faroug Tifratene, Olaa Motwalli, Benoit Marchand, Vladimir B Bajic, Takashi Gojobori, Esma R Isenovic, Magbubah Essack.
PloS one 17 (7), e0271737Download
Qatar genome Insights on genomics from the Middle East.
Hamdi Mbarek, Geethanjali Devadoss Gandhi, Senthil Selvaraj, Wadha Al‐Muftah, Radja Badji, Yasser Al‐Sarraj, Chadi Saad, Dima Darwish, Muhammad Alvi, Tasnim Fadl, Heba Yasin, Fatima Alkuwari, Rozaimi Razali, Waleed Aamer, Fatemeh Abbaszadeh, Ikhlak Ahmed, Younes Mokrab, Karsten Suhre, Omar Albagha, Khalid Fakhro, Ramin Badii, Said I Ismail, Asma Althani, Qatar Genome Program Research Consortium.
Human mutation 43 (4), 499-510.Download
Genetic predisposition to cancer across people of different ancestries in Qatar: a population-based, cohort study.
Mohamad Saad, Younes Mokrab, Najeeb Halabi, Jingxuan Shan, Rozaimi Razali, Khalid Kunji, Najeeb Syed, Ramzi Temanni, Murugan Subramanian, Michele Ceccarelli, Said I Ismail, Wadha Al-Muftah, Radja Badji, Hamdi Mbarek, Dima Darwish, Tasnim Fadl, Heba Yasin, Maryem Ennaifar, Rania Abdellatif, Fatima Alkuwari, Muhammad Alvi, Yasser Al-Sarraj, Chadi Saad, Eleni Fethnou, Fatima Qafoud, Eiman Alkhayat, Nahla Afifi, Sara Tomei, Wei Liu, Stephan Lorenz, Hakeem Almabrazi, Fazulur R Vempalli, Tariq Abu Saqri, Mohammedhusen Khatib, Mehshad Hamza, Tariq Abu Zaid, Ahmed El Khouly, Tushar Pathare, Shafeeq Poolat, Rashid Al-Ali, Omar Albagha, Souhaila Al-Khodor, Mashael Alshafai, Ramin Badii, Lotfi Chouchane, Xavier Estivill, Khalid Fakhro, Jithesh V Puthen, Karsten Suhre, Zohreh Tatari, Arash Rafii Tabrizi, Davide Bedognetti.
The Lancet Oncology 23 (3), 341-352Download

2021

Thousands of Qatari genomes inform human migration history and improve imputation of Arab haplotypes.
Rozaimi Mohamad Razali, Juan Rodriguez-Flores, Mohammadmersad Ghorbani, Haroon Naeem, Waleed Aamer, Elbay Aliyev, Ali Jubran, Biobank and Sample Preparation Fethnou Eleni, Qafoud Fatima, Alkhayat Eiman, Afifi Nahla, Tomei Sara, Liu Wei, Lorenz Stephan, Syed Najeeb, Almabrazi Hakeem, Vempalli Fazulur Rehaman, Temanni Ramzi, Saqri Tariq Abu, Khatib Mohammedhusen, Hamza Mehshad, Zaid Tariq Abu, El Khouly Ahmed, Pathare Tushar, Poolat Shafeeq, Al-Ali Rashid.
Nature Communications 12 (1), 5929Download

2018

Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance.
A Bokhari, M Essack, FF Lafi, C Andres-Barrao, R Jalal, S Alamoudi, R Razali, H Alzubaidy, KH Shah, S Siddique, VB Bajic, H Hirt, MM Saad.
Scientific reports 9 (1), 18154Download
In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.
Ghofran Othoum, Salim Bougouffa, Rozaimi Razali, Ameerah Bokhari, Soha Alamoudi, André Antunes, Xin Gao, Robert Hoehndorf, Stefan T Arold, Takashi Gojobori, Heribert Hirt, Ivan Mijakovic, Vladimir B Bajic, Feras F Lafi, Magbubah Essack.
BMC genomics 19, 1-11.Download
Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing.
Hassan Mahmood Jindal, Babu Ramanathan, Cheng Foh Le, Ranganath Gudimella, Rozaimi Razali, Rishya Manikam, Shamala Devi Sekaran.
Journal of biomedical science 25 (1), 1-14Download
The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance.
Rozaimi Razali, Salim Bougouffa, Mitchell JL Morton, Damien J Lightfoot, Intikhab Alam, Magbubah Essack, Stefan T Arold, Allan A Kamau, Sandra M Schmöckel, Yveline Pailles, Mohammed Shahid, Craig T Michell, Salim Al-Babili, Yung Shwen Ho, Mark Tester, Vladimir B Bajic, Sónia Negrão.
Frontiers in Plant Science 9, 1402.Download
DES-Mutation: System for Exploring Links of Mutations and Diseases.
Vasiliki Kordopati, Adil Salhi, Rozaimi Razali, Aleksandar Radovanovic, Faroug Tifratene, Mahmut Uludag, Yu Li, Ameerah Bokhari, Ahdab AlSaieedi, Arwa Bin Raies, Christophe Van Neste, Magbubah Essack, Vladimir B Bajic.
Scientific reports 8 (1), 13359.Download

2017

Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa.
Babu Ramanathan, Hassan Mahmood Jindal, Cheng Foh Le, Ranganath Gudimella, Arif Anwar, Rozaimi Razali, Johan Poole-Johnson, Rishya Manikam, Shamala Devi Sekaran.
PloS one 12 (8), e0182524Download
DES-TOMATO a knowledge exploration system focused on tomato species.
Adil Salhi, Sónia Negrão, Magbubah Essack, Mitchell JL Morton, Salim Bougouffa, Rozaimi Razali, Aleksandar Radovanovic, Benoit Marchand, Maxat Kulmanov, Robert Hoehndorf, Mark Tester, Vladimir B Bajic.
Scientific reports 7 (1), 5968Download
Identification of Putative Transmembrane Proteins Involved in Salinity Tolerance in Chenopodium quinoa by Integrating Physiological Data, RNAseq, and SNP Analyses.
Sandra M Schmöckel, Damien J Lightfoot, Rozaimi Razali, Mark Tester, David E Jarvis.
Frontiers in Plant Science 8, 1023Download
Semantic prioritization of novel causative genomic variants.
Imane Boudellioua, Rozaimi B Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V Gkoutos, Paul N Schofield, Robert Hoehndorf.
PLoS computational biology 13 (4), e1005500.Download
Genome wide profiling in oral squamous cell carcinoma identifies a four genetic marker signature of prognostic significance.
Vui King Vincent-Chong, Iman Salahshourifar, Kar Mun Woo, Arif Anwar, Rozaimi Razali, Ranganath Gudimella, Zainal Ariff Abdul Rahman, Siti Mazlipah Ismail, Thomas George Kallarakkal, Anand Ramanathan, Wan Mahadzir Wan Mustafa, Mannil Thomas Abraham, Keng Kiong Tay, Rosnah Binti Zain.
PloS one 12 (4), e0174865Download
bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli.
Ilham Ayub Shahmuradov, Rozaimi Mohamad Razali, Salim Bougouffa, Aleksandar Radovanovic, Vladimir B Bajic.
Bioinformatics 33 (3), 334-340Download

2016

Metagenomics as a preliminary screen for antimicrobial bioprospecting.
Soha Al-Amoudi, Rozaimi Razali, Magbubah Essack, Mohammad Shoaib Amini, Salim Bougouffa, John AC Archer, Feras F Lafi, Vladimir B Bajic.
Gene 594 (2), 248-258Download
Deciphering the Draft Genome of Toxoplasma gondii RH Strain.
Yee-Ling Lau, Wenn-Chyau Lee, Ranganath Gudimella, GuiPing Zhang, Xiao-Teng Ching, Rozaimi Razali, Farhanah Aziz, Arif Anwar, Mun-Yik Fong.
PloS one 11 (6), e0157901Download
Transcriptome analysis of Streptococcus pneumoniae treated with the designed antimicrobial peptides-DM3.
Cheng-Foh Le, Ranganath Gudimella, Rozaimi Razali, Rishya Manikam, Shamala Devi Sekaran.
Scientific reports 6 (1), 26828Download
Immortalization of epithelial cells in oral carcinogenesis as revealed by genome‐wide array comparative genomic hybridization A meta‐analysis.
Vui King Vincent–Chong, Iman Salahshourifar, Rozaimi Razali, Arif Anwar, Rosnah Binti Zain.
Head & neck 38 (S1), E783-E797Download

2015

Autoantibody profile of patients infected with knowlesi malaria.
Jonathan Liew, Amirah Amir, Yeng Chen, Mun Yik Fong, Rozaimi Razali, Yee Ling Lau.
Clinica Chimica Acta 448, 33-38Download
Draft genome of neurotropic nematode parasite Angiostrongylus cantonensis, causative agent of human eosinophilic meningitis.
Hoi-Sen Yong, Praphathip Eamsobhana, Phaik-Eem Lim, Rozaimi Razali, Farhanah Abdul Aziz, Nurul Shielawati Mohamed Rosli, Johan Poole-Johnson, Arif Anwar.
Acta Tropica 148, 51-57Download
Draft genome of Brugia pahangi: high similarity between B. pahangi and B. malayi.
Yee-Ling Lau, Wenn-Chyau Lee, Jinquan Xia, GuiPing Zhang, Rozaimi Razali, Arif Anwar, Mun-Yik Fong.
Parasites & Vectors volume 8, Article number: 451Download

2014

A whole genome analyses of genetic variants in two Kelantan Malay individuals.
Wan Khairunnisa Wan Juhari, Nur Aida Md Tamrin, Mohd Hanif Ridzuan Mat Daud, Hatin Wan Isa, Nurfazreen Mohd Nasir, Sathiya Maran, Nur Shafawati Abdul Rajab, Khairul Bariah Ahmad Amin Noordin, Nik Norliza Nik Hassan, Rick Tearle, Rozaimi Razali, Amir Feisal Merican, Bin Alwi Zilfalil.
The HUGO journal 8, 1-5Download
Genome-wide analysis of copy number variation identifies candidate gene loci associated with the progression of non-alcoholic fatty liver disease.
Shamsul Mohd Zain, Rosmawati Mohamed, David N Cooper, Rozaimi Razali, Sanjay Rampal, Sanjiv Mahadeva, Wah-Kheong Chan, Arif Anwar, Nurul Shielawati Mohamed Rosli, Anis Shafina Mahfudz, Phaik-Leng Cheah, Roma Choudhury Basu, Zahurin Mohamed.
PLoS One 9 (4), e95604Download

2012

Protein–protein interaction sites are hot spots for disease-associated nonsynonymous SNPs.
Alessia David, Rozami Razali, Mark N Wass, Michael JE Sternberg.
Human mutation 33 (2), 359-363Download