{"id":84,"date":"2024-02-25T12:05:28","date_gmt":"2024-02-25T12:05:28","guid":{"rendered":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/?page_id=84"},"modified":"2026-06-12T16:07:39","modified_gmt":"2026-06-12T13:07:39","slug":"publications","status":"publish","type":"page","link":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/publications\/","title":{"rendered":"PUBLICATIONS"},"content":{"rendered":"\n

2026<\/h2>\n\n\n\n
Machine Learning-Based Classification of Gliomas and Tumor Grades with SHAP-Guided Feature Interpretation.<\/strong>
<\/span>Ghaya Al-Rumaihi, Md Shaheenur Islam Sumon, Ahmed Hassanein, Marwan Malluhi, Sakib Abrar Hossain, Tahmid Zaman Raad, Muhammad E H Chowdhury, Rozaimi Razali<\/span><\/strong>, Shona Pedersen.
Genes 17 (5), 511<\/a>Download<\/a><\/div>\n\n\n\n
Identification of cryptic KMT2A-PTD and other novel fusion genes by transcriptome sequencing alters molecular risk stratification in AML-NK.<\/strong>
<\/span>Angeli Ambayya, Rozaimi Razali<\/span><\/strong>, Sarina Sulong, Yee Yee Yap, Veena Selvaratnam, Jameela Sathar, Rosline Hassan.
Journal of Molecular Medicine 104 (1), 32<\/a>Download<\/a><\/div>\n\n\n\n
The biomedical landscape of genomic structural variation in the Qatari population.<\/strong>
<\/span>Elbay Aliyev, Najeeb Syed, Alessia Visconti, Taghi Aliyev, Aziz Belkadi, Mohammadmersad Ghorbani, Niccol\u00f2 Rossi, Haroon Naeem, Geethanjali Devadoss Gandhi, Gaurav Thareja, Aljazi Al-Maraghi, Waleed Aamer, Amal Abdulsalam Ibrahim, Rulan Shaath, Farooq Omar Al-Ajli, Rozaimi Mohamad Razali<\/span><\/strong>, Fritz J Sedlazeck, Sonia Davila, Ammira Akil, Karsten Suhre, Younes Mokrab, Mario Falchi, Khalid A Fakhro.
Nature Communications 17 (1), 1019<\/a>Download<\/a><\/div>\n\n\n\n

2025<\/h2>\n\n\n\n
Near-complete Middle Eastern genomes refine autozygosity and enhance disease-causing and population-specific variant discovery.<\/strong>
<\/span>Mohammadmersad Ghorbani, Shabir Moosa, Zenab Siddig, Radi Farhad, Haroon Naeem, William T Harvey, Francesco Kumara Mastrorosa, Katherine M Munson, Rozaimi Mohamad Razali<\/span><\/strong>, Elbay Aliyev, Ilhame Diboun, Rawan Abouelhassan, Melissa Tauro, Sondoss Hassan, Rebecca Mathew, Muna Al Hashmi, Lisa S Mathew, Kun Wang, Abdul Rahman Salhab, Fazulur Rehaman Vempalli, Ahmed El Khouly, Qatar Genome Program Research Consortium, Iman Alazwani, Sara Tomei, Khalid A Fakhro, Alia Satti, Ruba Benini, Arang Rhie, Evan E Eichler, Younes Mokrab.
Nature Genetics 57 (5), 1119\u20131131<\/a>Download<\/a><\/div>\n\n\n\n
Somatic mutations in Middle East and North Africa breast cancer patients: a systematic review.<\/strong>
<\/span>Lama Abujamous, Isha Ahmed, Yasmin Ahen, Hadeel Alotaibi, Ala-Eddin Al Moustafa, Shereena Mohd Arif, Hamda Al-Thawadi, Rozaimi Razali<\/span><\/strong>.
The Oncologist 30 (9), oyaf205<\/a>Download<\/a><\/div>\n\n\n\n
Gene expression profiling and pathway analysis in acute myeloid leukaemia-normal karyotype patients.<\/strong>
<\/span>Angeli Ambayya, Rozaimi Razali<\/span><\/strong>, Sarina Sulong, Yee Yee Yap, Veena Selvaratnam, Jameela Sathar, Rosline Hassan.
PLoS One 20 (9), e0328911<\/a>Download<\/a><\/div>\n\n\n\n
Insects in agricultural greenhouses: a metagenomic analysis of microbes in Trialeurodes vaporariorum<\/em> infesting tomato and cucumber crops.<\/strong>
<\/span>Abeer Qush, Nada Assaad, Fatima Abdulla Alkhayat, Mohammed Saif Al-Kuwari, Nasser Al-Khalaf, Maya Bassil, Hadi M Yassine, Asad Zeidan, Rozaimi Razali<\/span><\/strong>, Layla Kamareddine.
Frontiers in Plant Science 16, 1581707<\/a>Download<\/a><\/div>\n\n\n\n
Characterizing low femoral neck BMD in Qatar Biobank participants using machine learning models.<\/strong>
<\/span>Nedhal Al-Husaini, Rozaimi Razali<\/span><\/strong>, Amal Al-Haidose, Mohammed Al-Hamdani, Atiyeh M Abdallah.
BMC Musculoskeletal Disorders 26 (1), 492<\/a>Download<\/a><\/div>\n\n\n\n

2024<\/h2>\n\n\n\n
Smoking induced salivary microbiome dysbiosis and is correlated with lipid biomarkers<\/strong>.
<\/span>Layla I Mohammed, Rozaimi Razali<\/span><\/strong>, Zain Zaki Zakaria, Fatiha M Benslimane, Farhan Cyprian, Maha Al-Asmakh.
BMC Oral Health 24 (1), 608<\/a>Download<\/a><\/div>\n\n\n\n
Vitamin D status affects proteomic profile of HDL-associated proteins and inflammatory mediators in dyslipidemia<\/strong>.
<\/span>H Mousa, RM Razali<\/span><\/strong>, SM Zughaier.
The Journal of Nutritional Biochemistry 123, 109472<\/a>Download<\/a><\/div>\n\n\n\n

2023<\/h2>\n\n\n\n
Genomic Alterations, Gene Expression Profiles and Functional Enrichment of Normal-Karyotype Acute Myeloid Leukaemia Based on Targeted Next-Generation Sequencing.
<\/span><\/strong>A Ambayya, R Razali<\/span><\/strong>, S Sulong, ES Zulkefli, YY Yap, J Sathar, R Hassan.
Cancers 15 (5), 1386.<\/a>Download<\/a><\/div>\n\n\n\n
Comparing the Biology of Young versus Old Age Estrogen-Receptor-Positive Breast Cancer through Gene and Protein Expression Analyses.
<\/span><\/strong>Alaa Siddig, Wan Faiziah Wan Abdul Rahman, Siti Norasikin Mohd Nafi, Sarina Sulong, Maya Mazuwin Yahya, Tengku Ahmad Damitri Al-Astani Tengku Din, Rozaimi Razali<\/span><\/strong>, Kamarul Imran Musa.
Biomedicines 11 (1), 200<\/a>Download<\/a><\/div>\n\n\n\n

2022<\/h2>\n\n\n\n
DES-Amyloidoses “Amyloidoses through the looking-glass”: A knowledgebase developed for exploring and linking information related to human amyloid-related diseases.
<\/span><\/strong>Vladan P Bajic, Adil Salhi, Katja Lakota, Aleksandar Radovanovic, Rozaimi Razali<\/span><\/strong>, Lada Zivkovic, Biljana Spremo-Potparevic, Mahmut Uludag, Faroug Tifratene, Olaa Motwalli, Benoit Marchand, Vladimir B Bajic, Takashi Gojobori, Esma R Isenovic, Magbubah Essack.
PloS one 17 (7), e0271737<\/a>Download<\/a><\/div>\n\n\n\n
Qatar genome Insights on genomics from the Middle East.
<\/span><\/strong>Hamdi Mbarek, Geethanjali Devadoss Gandhi, Senthil Selvaraj, Wadha Al\u2010Muftah, Radja Badji, Yasser Al\u2010Sarraj, Chadi Saad, Dima Darwish, Muhammad Alvi, Tasnim Fadl, Heba Yasin, Fatima Alkuwari, Rozaimi Razali<\/span><\/strong>, Waleed Aamer, Fatemeh Abbaszadeh, Ikhlak Ahmed, Younes Mokrab, Karsten Suhre, Omar Albagha, Khalid Fakhro, Ramin Badii, Said I Ismail, Asma Althani, Qatar Genome Program Research Consortium.
Human mutation 43 (4), 499-510.<\/a>Download<\/a><\/div>\n\n\n\n
Genetic predisposition to cancer across people of different ancestries in Qatar: a population-based, cohort study.
<\/span><\/strong>Mohamad Saad, Younes Mokrab, Najeeb Halabi, Jingxuan Shan, Rozaimi Razali<\/span><\/strong>, Khalid Kunji, Najeeb Syed, Ramzi Temanni, Murugan Subramanian, Michele Ceccarelli, Said I Ismail, Wadha Al-Muftah, Radja Badji, Hamdi Mbarek, Dima Darwish, Tasnim Fadl, Heba Yasin, Maryem Ennaifar, Rania Abdellatif, Fatima Alkuwari, Muhammad Alvi, Yasser Al-Sarraj, Chadi Saad, Eleni Fethnou, Fatima Qafoud, Eiman Alkhayat, Nahla Afifi, Sara Tomei, Wei Liu, Stephan Lorenz, Hakeem Almabrazi, Fazulur R Vempalli, Tariq Abu Saqri, Mohammedhusen Khatib, Mehshad Hamza, Tariq Abu Zaid, Ahmed El Khouly, Tushar Pathare, Shafeeq Poolat, Rashid Al-Ali, Omar Albagha, Souhaila Al-Khodor, Mashael Alshafai, Ramin Badii, Lotfi Chouchane, Xavier Estivill, Khalid Fakhro, Jithesh V Puthen, Karsten Suhre, Zohreh Tatari, Arash Rafii Tabrizi, Davide Bedognetti.
The Lancet Oncology 23 (3), 341-352<\/a>Download<\/a><\/div>\n\n\n\n

2021<\/h2>\n\n\n\n
Thousands of Qatari genomes inform human migration history and improve imputation of Arab haplotypes.
<\/span><\/strong>Rozaimi Mohamad Razali<\/span><\/strong>, Juan Rodriguez-Flores, Mohammadmersad Ghorbani, Haroon Naeem, Waleed Aamer, Elbay Aliyev, Ali Jubran, Biobank and Sample Preparation Fethnou Eleni, Qafoud Fatima, Alkhayat Eiman, Afifi Nahla, Tomei Sara, Liu Wei, Lorenz Stephan, Syed Najeeb, Almabrazi Hakeem, Vempalli Fazulur Rehaman, Temanni Ramzi, Saqri Tariq Abu, Khatib Mohammedhusen, Hamza Mehshad, Zaid Tariq Abu, El Khouly Ahmed, Pathare Tushar, Poolat Shafeeq, Al-Ali Rashid.
Nature Communications 12 (1), 5929<\/a>Download<\/a><\/div>\n\n\n\n

2018<\/h2>\n\n\n\n
Bioprospecting desert plant Bacillus<\/em> endophytic strains for their potential to enhance plant stress tolerance.
<\/span><\/strong>A Bokhari, M Essack, FF Lafi, C Andres-Barrao, R Jalal, S Alamoudi, R Razali<\/span><\/strong>, H Alzubaidy, KH Shah, S Siddique, VB Bajic, H Hirt, MM Saad.
Scientific reports 9 (1), 18154<\/a>Download<\/a><\/div>\n\n\n\n
In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.
<\/span><\/strong>Ghofran Othoum, Salim Bougouffa, Rozaimi Razali<\/span><\/strong>, Ameerah Bokhari, Soha Alamoudi, Andr\u00e9 Antunes, Xin Gao, Robert Hoehndorf, Stefan T Arold, Takashi Gojobori, Heribert Hirt, Ivan Mijakovic, Vladimir B Bajic, Feras F Lafi, Magbubah Essack.
BMC genomics 19, 1-11.<\/a>Download<\/a><\/div>\n\n\n\n
Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing.
<\/span><\/strong>Hassan Mahmood Jindal, Babu Ramanathan, Cheng Foh Le, Ranganath Gudimella, Rozaimi Razali<\/span><\/strong>, Rishya Manikam, Shamala Devi Sekaran.
Journal of biomedical science 25 (1), 1-14<\/a>Download<\/a><\/div>\n\n\n\n
The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance.
<\/span><\/strong>Rozaimi Razali<\/span><\/strong>, Salim Bougouffa, Mitchell JL Morton, Damien J Lightfoot, Intikhab Alam, Magbubah Essack, Stefan T Arold, Allan A Kamau, Sandra M Schm\u00f6ckel, Yveline Pailles, Mohammed Shahid, Craig T Michell, Salim Al-Babili, Yung Shwen Ho, Mark Tester, Vladimir B Bajic, S\u00f3nia Negr\u00e3o.
Frontiers in Plant Science 9, 1402.<\/a>Download<\/a><\/div>\n\n\n\n

2017<\/h2>\n\n\n\n
Identification of putative transmembrane proteins involved in salinity tolerance in Chenopodium quinoa by integrating physiological data, RNAseq, and SNP analyses.
<\/span><\/strong>Sandra M Schm\u00f6ckel, Damien J Lightfoot, Rozaimi Razali<\/span><\/strong>, Mark Tester, Vladimir B Bajic.
Frontiers in Plant Science 8, 759<\/a>Download<\/a><\/div>\n\n\n\n
Semantic prioritization of novel causative genomic variants.
<\/span><\/strong>Imane Boudellioua, Rozaimi B Mahamad Razali<\/span><\/strong>, Maxat Kulmanov, Yasmeen Hashish, Vladimir B Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V Gkoutos, Paul N Schofield, Robert Hoehndorf.
PLoS computational biology 13 (4), e1005500.<\/a>Download<\/a><\/div>\n\n\n\n
Genome wide profiling in oral squamous cell carcinoma identifies a four genetic marker signature of prognostic significance.
<\/strong>Vui King Vincent-Chong, Iman Salahshourifar, Kar Mun Woo, Arif Anwar, Rozaimi Razali<\/span><\/strong>, Ranganath Gudimella, Zainal Ariff Abdul Rahman, Siti Mazlipah Ismail, Thomas George Kallarakkal, Anand Ramanathan, Wan Mahadzir Wan Mustafa, Mannil Thomas Abraham, Keng Kiong Tay, Rosnah Binti Zain.
PloS one 12 (4), e0174865<\/a>Download<\/a><\/div>\n\n\n\n
bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli.
<\/span><\/strong>Ilham Ayub Shahmuradov, Rozaimi Mohamad Razali<\/span><\/strong>, Salim Bougouffa, Aleksandar Radovanovic, Vladimir B Bajic.
Bioinformatics 33 (3), 334-340<\/a>Download<\/a><\/div>\n\n\n\n

2016<\/h2>\n\n\n\n
Metagenomics as a preliminary screen for antimicrobial bioprospecting.
<\/span><\/strong>Soha Al-Amoudi, Rozaimi Razali<\/span><\/strong>, Magbubah Essack, Mohammad Shoaib Amini, Salim Bougouffa, John AC Archer, Feras F Lafi, Vladimir B Bajic.
Gene 594 (2), 248-258<\/a>Download<\/a><\/div>\n\n\n\n
Deciphering the Draft Genome of Toxoplasma gondii RH Strain.
<\/span><\/strong>Yee-Ling Lau, Wenn-Chyau Lee, Ranganath Gudimella, GuiPing Zhang, Xiao-Teng Ching, Rozaimi Razali<\/span><\/strong>, Farhanah Aziz, Arif Anwar, Mun-Yik Fong.
PloS one 11 (6), e0157901<\/a>Download<\/a><\/div>\n\n\n\n
Transcriptome analysis of Streptococcus pneumoniae treated with the designed antimicrobial peptides-DM3.
<\/span><\/strong>Cheng-Foh Le, Ranganath Gudimella, Rozaimi Razali<\/span><\/strong>, Rishya Manikam, Shamala Devi Sekaran.
Scientific reports 6 (1), 26828<\/a>Download<\/a><\/div>\n\n\n\n
Immortalization of epithelial cells in oral carcinogenesis as revealed by genome\u2010wide array comparative genomic hybridization A meta\u2010analysis.
<\/span><\/strong>Vui King Vincent\u2013Chong, Iman Salahshourifar, Rozaimi Razali<\/span><\/strong>, Arif Anwar, Rosnah Binti Zain.
Head & neck 38 (S1), E783-E797<\/a>Download<\/a><\/div>\n\n\n\n

2015<\/h2>\n\n\n\n
Autoantibody profile of patients infected with knowlesi malaria.
<\/span><\/strong>Jonathan Liew, Amirah Amir, Yeng Chen, Mun Yik Fong, Rozaimi Razali<\/span><\/strong>, Yee Ling Lau.
Clinica Chimica Acta 448, 33-38<\/a>Download<\/a><\/div>\n\n\n\n
Draft genome of neurotropic nematode parasite Angiostrongylus cantonensis, causative agent of human eosinophilic meningitis.
<\/span><\/strong>Hoi-Sen Yong, Praphathip Eamsobhana, Phaik-Eem Lim, Rozaimi Razali<\/span><\/strong>, Farhanah Abdul Aziz, Nurul Shielawati Mohamed Rosli, Johan Poole-Johnson, Arif Anwar.
Acta Tropica 148, 51-57<\/a>Download<\/a><\/div>\n\n\n\n
Draft genome of Brugia pahangi<\/em>: high similarity between B. pahangi<\/em> and B. malayi<\/em>.
<\/span><\/strong>Yee-Ling Lau, Wenn-Chyau Lee, Jinquan Xia, GuiPing Zhang, Rozaimi Razali<\/span><\/strong>, Arif Anwar, Mun-Yik Fong.
Parasites & Vectors volume 8, Article number: 451<\/a>Download<\/a><\/div>\n\n\n\n

2014<\/h2>\n\n\n\n
A whole genome analyses of genetic variants in two Kelantan Malay individuals.
<\/span><\/strong>Wan Khairunnisa Wan Juhari, Nur Aida Md Tamrin, Mohd Hanif Ridzuan Mat Daud, Hatin Wan Isa, Nurfazreen Mohd Nasir, Sathiya Maran, Nur Shafawati Abdul Rajab, Khairul Bariah Ahmad Amin Noordin, Nik Norliza Nik Hassan, Rick Tearle, Rozaimi Razali<\/span><\/strong>, Amir Feisal Merican, Bin Alwi Zilfalil.
The HUGO journal 8, 1-5<\/a>Download<\/a><\/div>\n\n\n\n
Genome-wide analysis of copy number variation identifies candidate gene loci associated with the progression of non-alcoholic fatty liver disease.
<\/span><\/strong>Shamsul Mohd Zain, Rosmawati Mohamed, David N Cooper, Rozaimi Razali<\/span><\/strong>, Sanjay Rampal, Sanjiv Mahadeva, Wah-Kheong Chan, Arif Anwar, Nurul Shielawati Mohamed Rosli, Anis Shafina Mahfudz, Phaik-Leng Cheah, Roma Choudhury Basu, Zahurin Mohamed.
PLoS One 9 (4), e95604<\/a>Download<\/a><\/div>\n\n\n\n

2012<\/h2>\n\n\n\n
Protein\u2013protein interaction sites are hot spots for disease-associated nonsynonymous SNPs.
<\/span><\/strong>Alessia David, Rozaimi Razali<\/span><\/strong>, Mark N Wass, Michael JE Sternberg.
Human mutation 33 (2), 359-363<\/a>Download<\/a><\/div>\n","protected":false},"excerpt":{"rendered":"

2026 Machine Learning-Based Classification of Gliomas and Tumor Grades with SHAP-Guided Feature Interpretation.Ghaya Al-Rumaihi, Md Shaheenur Islam Sumon, Ahmed Hassanein, […]<\/p>\n","protected":false},"author":1428,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-84","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/pages\/84","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/users\/1428"}],"replies":[{"embeddable":true,"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/comments?post=84"}],"version-history":[{"count":7,"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/pages\/84\/revisions"}],"predecessor-version":[{"id":1213,"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/pages\/84\/revisions\/1213"}],"wp:attachment":[{"href":"http:\/\/qufaculty.qu.edu.qa\/rozaimir\/wp-json\/wp\/v2\/media?parent=84"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}